Datasets:
query_name string | source_chrom string | source_start int64 | source_end int64 | region_label string | species string | alignment_name string | assembly string | taxonomy_id int64 | family string | clade string | phylogenetic_rank int64 | alignment_source string | t_chrom string | t_start int64 | t_end int64 | t_strand string | t_src_size int64 | pre_resize_t_start int64 | pre_resize_t_end int64 | fragment_count int64 | aligned_bases int64 | sequence string | augmentation string |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
fa1_utr3_11_000115169599_000115169854 | chr11 | 115,169,599 | 115,169,854 | utr3 | Eschrichtius robustus | Eschrichtius_robustus | GCA_004363415.1 | 9,764 | Eschrichtiidae | mammals | 1 | zoonomia_cactus | EscRob_flattened_line_11311 | 42,654 | 42,909 | + | 117,402 | 42,781 | 42,782 | 1 | 1 | CTTTTTGGTTTGTTTTCTCTGTGGTTGTGTATTTCATCATTTAAACTTGCAACGGATGCTGGCAGGCTGGAGTCTAGCTAATCCACAAAAGCTGTTTGCCCAGACACAGCAGCCCTGATTAAAAAGTATTGCTATGGAAGGGAGCCTTCTGTACTAATCAGTCTCTGTTAGCTAGTGACGAAATTACTATCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTCTCTCCCTCTCTCTAGGCCTGTTTT | - |
fa1_utr3_13_000071439097_000071439352 | chr13 | 71,439,097 | 71,439,352 | utr3 | Mungos mungo | Mungos_mungo | GCA_004023785.1 | 210,652 | Herpestidae | mammals | 1 | zoonomia_cactus | MunMun_flattened_line_60 | 207,089 | 207,344 | + | 1,123,500 | 207,216 | 207,217 | 1 | 1 | TGTTTTCACTTTTGTGCAGATAACTGGAAGTAAAGCTGCAAACAGTGCTTATTACACACTGAAGTTACTTTCTCTTTGTTTTTACTAATCTGGAGTTACACCTTTCAAGACTGATTTTATGAATCAGTACAGTCGCTGTACATTTTATGATTTTGCTGTCATCTTAAAATTTTATGATCATAACATTATTTATTACCATGAATAGCAAAATCCTAAATGTCCAAGAAAACTAGCTTAAACATGTTTAAAGATAGT | - |
fa1_utr3_11_000043343014_000043343269 | chr11 | 43,343,014 | 43,343,269 | utr3 | Daubentonia madagascariensis | Daubentonia_madagascariensis | GCA_004027145.1 | 31,869 | Daubentoniidae | mammals | 1 | zoonomia_cactus | ctg17 | 666,993 | 667,248 | - | 31,384,267 | 667,120 | 667,121 | 1 | 1 | AAATACTTACCATCTTTCTTAAAATGTAGAAGTGACATTACATTTTTAGGAAGAGGTAAGTTGCTTTGCTCTGCTTACTTAACTCTTTTCCATATATTGTGATATAAACTTTTGAATATGGGATCTTACTATTTGAATAGAAATGTGTATGTATAATATACATACATACATAAGCATATATGTGTGTGTGTATATATATATGCATGCTGTGAAACTTGACTACACAACATAAATCATTTTTCAAAATTCTAGGAA | + |
fa1_utr3_1_000207072348_000207072603 | chr1 | 207,072,348 | 207,072,603 | utr3 | Macroglossus sobrinus | Macroglossus_sobrinus | GCA_004027375.1 | 326,083 | Pteropodidae | mammals | 1 | zoonomia_cactus | MacSob_scaffold_7448 | 77,070 | 77,325 | + | 113,658 | 77,197 | 77,198 | 1 | 1 | AAACACCCAACCCGTCCACTCGCCCCTGGGCAGGGAGATGTTTCACACTGCAGAATAGCTAAGGCTGGTCTAGAAACACACGGCCTCACACTCTGTGTTAAGACTCATGATGGGGTGTCAGGGGTAGGGATTCGAAGTTAAATGATTCCTTGGTGATTAGTGATAAGGGCAGGAGGCCAGGACTGGAGGGAGACACACGGTTACACCACCGGAATGCTGACTTGGGTCTTCGGCTGTTCGGCCCCTTCTTGCATG | - |
fa1_utr3_10_000000811524_000000811779 | chr10 | 811,524 | 811,779 | utr3 | Odocoileus virginianus | Odocoileus_virginianus | GCA_002102435.1 | 9,874 | Cervidae | mammals | 1 | zoonomia_cactus | KZ104774.1 | 1,509,954 | 1,510,209 | - | 4,716,471 | 1,510,081 | 1,510,082 | 1 | 1 | tttaagtatcCTAAGCAGCAgacattaaaataagaatatttcctGCTAAATGTAACCATACAGTTTATTCcacaaaatgttatttaataagactgagggtttttttttaagagattatttCCATCCAATATTTAAagacttgaattttatttaaacttgaaAATGACTTTGCCTTAACTTTTGTATAGGACAGTTTAAGAGTTCTGAGATGGGCCTGGGTTGGCATGAGTGGGGTCTGCTGTCACGGTGTCACTG | - |
fa1_utr3_8_000080968301_000080968556 | chr8 | 80,968,301 | 80,968,556 | utr3 | Erinaceus europaeus | Erinaceus_europaeus | GCF_000296755.1 | 9,365 | Erinaceidae | mammals | 1 | zoonomia_cactus | JH835406.1 | 3,647,154 | 3,647,409 | - | 5,146,105 | 3,647,281 | 3,647,282 | 1 | 1 | acacccccattttgtatatggggaaactgaggcacagagaaattaagtcatttgttctgggtcacactgtaaagtcaatggtggaacagggactgcagagtggtgagtttgcagcttcaaaaccaatgcttctctgtagactaaagttgtcccctctgAGAATTCAACACCTCAACTCACTTTTCCATGAAATAAAAATTGtgcatttttttcctctcataaaAATTGTTGAAATACTACAGGCAATATTTGAAC | + |
fa1_utr3_13_000042607279_000042607534 | chr13 | 42,607,279 | 42,607,534 | utr3 | Spilogale gracilis | Spilogale_gracilis | GCA_004023965.1 | 30,551 | Mephitidae | mammals | 1 | zoonomia_cactus | SpiGra_flattened_line_20494 | 59,043 | 59,298 | - | 72,951 | 59,170 | 59,171 | 1 | 1 | ACTAGTTAAATATGTCTGTACATTTAAAACATTAAATATGTCGACAGCAAGACATTTTTAAATATTTTGAATCAAATACTATGGCACAAATATAATTTACAATACTTTGCACAGAAAACATTACATCTGACATATAACTTTAGATATTATATAAAAATACATATATTTTCTTTCCTCATTAGAAAAAGTATTTATTTGCAGGTCCCAGCATGATGTAACCATTCAAAGGAACTTAACTTTTCGGCTGGTCATCCG | - |
fa1_utr3_17_000059400495_000059400750 | chr17 | 59,400,495 | 59,400,750 | utr3 | Pithecia pithecia | Pithecia_pithecia | GCA_004026645.1 | 43,777 | Pitheciidae | mammals | 1 | zoonomia_cactus | tarseq_100 | 3,288,996 | 3,289,251 | + | 7,367,152 | 3,289,123 | 3,289,124 | 1 | 1 | CGCACACACACGCACAATTGAAAACATGATTCCGATTTGTTGAAAATTCTTCCAATAGGAAGAATCACTGTAAGTTGTTACTACTAAATTAACTTGGTTTCATTTATTTTCTTTTCTAGCCAATACTGGTGCAAGAAAATATTTCAGTTCTCAACCTCTGGAACTGCAGAGTCTGTTCCACTGCGGAAAAAATGCAGAGAGGCATTGCTTTAAAGCCTTGATCCAGATGAAAGTGATAGAGACCTTAAAAAAAAA | - |
fa1_utr3_20_000063744119_000063744374 | chr20 | 63,744,119 | 63,744,374 | utr3 | Zalophus californianus | Zalophus_californianus | GCA_004024565.1 | 9,704 | Otariidae | mammals | 1 | zoonomia_cactus | ZalCal_flattened_line_4236 | 2,892 | 3,147 | - | 224,444 | 3,019 | 3,020 | 1 | 1 | AGCTCTGGATCCTGACCAGGTTGTATATTTGGACTCTGGGTTTTGGGAAACAGTCATAACACTGCCAGGACTGAATAGGGACCTCGACTCAAGAGACACGGCTACTCCTTCCAACTTTGCACATCTTCCTTTTTAAAAAAGAAACTCTGAGAAAAGGCAAAAACTGGAACTCTTTGCAATATGATGAAAGATAATCTTATTTTCGCTCATTATGTGACGTGCGACGCTTAAGAAAGCCATACTTACTGGTTTTTA | - |
fa1_utr3_17_000039534109_000039534364 | chr17 | 39,534,109 | 39,534,364 | utr3 | Choloepus hoffmanni | Choloepus_hoffmanni | GCA_000164785.2 | 9,358 | Megalonychidae | mammals | 1 | zoonomia_cactus | KN195032.1 | 1,482,014 | 1,482,269 | - | 1,567,532 | 1,482,141 | 1,482,142 | 1 | 1 | GCTTGGCCCAGTTTCCTTAGTATTTTCTTCAGCTGCCCATAGGAACAATTAGGATTTCAAAACAAGAACGGATCTATATGTTTAAAGGAAAGCAGTTAGCACAAATTTGTAAGTAGGACTTCTATTAGCTTATGCCATAGACATCACCCAaccttatgtgtgtgtgtgtgtatatatatatatatatataatatgcatatatagTTACAGTGCTAAAATGATTACCAGCAGGTTTTGAGAGAGAATGCTGCATCA | + |
fa1_utr3_2_000044944993_000044945248 | chr2 | 44,944,993 | 44,945,248 | utr3 | Microtus ochrogaster | Microtus_ochrogaster | GCF_000317375.1 | 79,684 | Cricetidae | mammals | 1 | zoonomia_cactus | CM001681.1 | 8,599,466 | 8,599,721 | + | 62,639,585 | 8,599,593 | 8,599,594 | 1 | 1 | ccaccaccaccaccacggccaccccaAAGGACCGCGACGCCAACAGACAGTCACAAACGCTGATCTTGCGGGCAGAAAACATAAAAGAGGTGACAATTGTATACTTTCCAGGACAAGCACGGTTTCTCCTTTTGGTTCCCACGGACCCGGCACCCCACCTGCATGACGATTTATTTGTATCTGGGAAAATATTCTCTCTAGTTTAAAGTGATTTAAGGAGTCGACCATACAAAAACCACCACCGCCGAGACAAGA | + |
fa1_utr3_11_000061788296_000061788551 | chr11 | 61,788,296 | 61,788,551 | utr3 | Odobenus rosmarus | Odobenus_rosmarus | GCF_000321225.1 | 9,707 | Odobenidae | mammals | 1 | zoonomia_cactus | KB229346.1 | 539,700 | 539,955 | - | 1,502,353 | 539,827 | 539,828 | 1 | 1 | ccgccaaaaGCCTGCATGTGCATAGAGCGCCCCTCCCTCCCAGTTAACTCCCAGTTCCTGTCCCTGAGTGCTGACTCATATTTATCGTGTACCAACTCTGACTctggagtgggcagagggaagcCGCCCTGGGCCTGCTTGCTTCCTCTCCCTGTTCTTTCCTTCTgaagtaaatatacatatataaataaatgtaaaaacatggCTTTGTATCTGACCTTGCCTCCCCATCTCTTCTTGAGACTGTTGTGGTAG | + |
fa1_utr3_X_000152166341_000152166596 | chrX | 152,166,341 | 152,166,596 | utr3 | Microcebus murinus | Microcebus_murinus | GCA_000165445.3 | 30,608 | Cheirogaleidae | mammals | 1 | zoonomia_cactus | CM007693.1 | 73,072,609 | 73,072,864 | + | 144,923,918 | 73,072,736 | 73,072,737 | 1 | 1 | CCTTAAGACAGTCATTAACAACCGCGCCTCCCCCCCCCATTCCCACATATCCACAAGACTACACTCTTCTAGTCATGAATTTACCTACAGACACAATCTTAGGAATAATGGGACTGGCATGCATTATCCCAGCAATGGCAAGGAAGCAGGGGATGAGGAGAGGATGGATGAAAAGGCAATCAGCAGCTAATGATACACCCCTTACGAGCTTTGTCCAGGGGTGGGCAGGAAGAATCTGCTTGTGGTGCCATCTGT | + |
fa1_utr3_10_000000254367_000000254622 | chr10 | 254,367 | 254,622 | utr3 | Nycticebus coucang | Nycticebus_coucang | GCA_004027815.1 | 9,470 | Lorisidae | mammals | 1 | zoonomia_cactus | k141_771232 | 31,824 | 32,079 | - | 35,013 | 31,951 | 31,952 | 1 | 1 | ACATTTATTAACCAATGTTAACACATTAAATGAATCTATATATTGCTAGTCAGAGCAGCTTACAAAATGCCAGAATGCATCATAGAACTGGACAGCCACAATGAGTACGTACAATGTGCATAGTGGCTAAGCTCAACACCTGGATATAGCTTTATGATTTGCAGGAAATTTTTAATAATGATTCCTAAAACAATCAATTGTAGTTTTACCTAAAACTTTTACAAAACCAGGCCACAATCTCTTTTTTTAATTTTG | - |
fa1_utr3_7_000102251067_000102251322 | chr7 | 102,251,067 | 102,251,322 | utr3 | Lemur catta | Lemur_catta | GCA_004024665.1 | 9,447 | Lemuridae | mammals | 1 | zoonomia_cactus | scaffold_22 | 8,857,676 | 8,857,931 | - | 35,902,736 | 8,857,803 | 8,857,804 | 1 | 1 | GCAGTATTGGGTATAATTTACAAGATGTAGTTGTCATACTGTATATTACTGATTGAAAACTTTTTGACCGTATTGTGTATCATTGAAACCTTTGTCTTAGGTCAACATCTTTGGATGACATTTTTAATGGTGCATTCATTATTTCTTAAGTTTAATTAATATTACTTTTTTTGATTTGGGGGGGTGGGAGGGAGTTATAATTTTAAAGGTATGCTCCCGCTATTACACCTCAGTGTGCTTGTTATTAATTAACTT | + |
fa1_utr3_11_000015969756_000015970011 | chr11 | 15,969,756 | 15,970,011 | utr3 | Capromys pilorides | Capromys_pilorides | GCA_004027915.1 | 34,842 | Capromyidae | mammals | 1 | zoonomia_cactus | CapPil_scaffold_80334 | 4,471 | 4,726 | + | 10,766 | 4,598 | 4,599 | 1 | 1 | TTTGTTTTAGCTCCAGCTCTGCCTCAGTACTGGGGTTCGATAACTTGTAGCCATGTTCTTAAAAATGAAAGGCTATTCAGGAACCACCTGATTGTAAACACCTCTTCTATTGGCACAGATAGTAATGCTGTATTTGAATCTAAATTTTGTGCATACGCAGTTTATTTTATTTATTAGCCAAGTTTGGCTCTAAATATCCTTGGAAATTAAGAATGACAATCATAGAGATCACTTCATTTTTGTTTTCAGTGGGGC | - |
fa1_utr3_1_000036340367_000036340622 | chr1 | 36,340,367 | 36,340,622 | utr3 | Chelonia mydas | cheMyd1 | CheMyd_1.0/cheMyd1 | 8,469 | Cheloniidae | reptiles | 3 | ucsc_multiz100way | KB530910 | 2,545,693 | 2,545,948 | - | 9,253,364 | 2,545,820 | 2,545,821 | 1 | 1 | ACTGCTTCActatgtagctccactgaaatcagatgGTTTCTTTGGTTACCACAACTAGGAGAGAGACCATTACATCACAGCTTATTCCTGTGAGTGCTGCGGGGCTCCAAGCTACGGCTGGGAACAGTGTGTGGTCAGGTCTAGGGGAAAGACCGCATTTGAAAAGCAAAACTGGCTTCTGGGTTAATCAGAAGCCTGGATCGGGCAGCGTAGGCCACGGGATCTCTGGTGAGAACAGTTCTCTGGCAAGACAGG | + |
fa1_utr3_7_000155775196_000155775451 | chr7 | 155,775,196 | 155,775,451 | utr3 | Catagonus wagneri | Catagonus_wagneri | GCA_004024745.1 | 51,154 | Tayassuidae | mammals | 1 | zoonomia_cactus | CatWag_scaffold_44803 | 19,321 | 19,576 | - | 25,656 | 19,448 | 19,449 | 1 | 1 | AAGATAAGCGCAACCATTATCAAATGTTCTCTGCTGCGGAAAATGCTGAGGCTGTGACGGCAGCGTCCCCCTCAGTCTGAGTCGCCGCGGCCGGCCACACACAGGGCCACGAGGAACAGTGTCTACATGCATCGTAAGCACTGGGAAAACAAAAGGAGCGAAACCGTGGTTCTCGGTGGTGACAGCGCACGTGGAGCATCTCGCGCCGGCTCCGGTCGGCCCGGCCCCGAGTTCAGCTCTTCTGGAACCGACACC | - |
fa1_utr3_1_000023309147_000023309402 | chr1 | 23,309,147 | 23,309,402 | utr3 | Ficedula albicollis | ficAlb2 | FicAlb1.5/ficAlb2 | 59,894 | Muscicapidae | birds | 2 | ucsc_multiz100way | chr23 | 2,949,119 | 2,949,374 | - | 7,944,683 | 2,949,246 | 2,949,247 | 1 | 1 | attttgatcTCAAGCATCTTAGTCTAATCTAAAATAATACTTGACTAGGAATGAGAATTACAGCTTGGGTGCTGTGGCACACTAAACTAACTTCTTGCTACGGATAACACAAACATACTCTCCAGATTCTGCTTATTTCTATcttgacattttaatttgatGTTCTGCCATGATGAACAATTTGCCTTAGAATTCTCCTGCCTTATAATAAAGGCTGTTAAAAAATTTAAGACTTTATCTTTTGAGGGCATTGCT | - |
fa1_utr3_16_000009118681_000009118936 | chr16 | 9,118,681 | 9,118,936 | utr3 | Lycaon pictus | Lycaon_pictus | GCA_001887905.1 | 9,622 | Canidae | mammals | 1 | zoonomia_cactus | CM007575.1 | 61,240,949 | 61,241,204 | - | 123,855,249 | 61,241,076 | 61,241,077 | 1 | 1 | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN | - |
fa1_utr3_7_000140084725_000140084980 | chr7 | 140,084,725 | 140,084,980 | utr3 | Petromus typicus | Petromus_typicus | GCA_004026965.1 | 10,183 | Petromuridae | mammals | 1 | zoonomia_cactus | PetTyp_scaffold_53998 | 5,051 | 5,306 | - | 23,416 | 5,178 | 5,179 | 1 | 1 | CACTGAATTTGTAAATTTTTAAGTAGCTTACAATGATTATTATAGGGAAGGACCAGTCACTTATTTAAAGCTACATTTAATATACATTTCAATTTCTATAAAATATTGAAAGTAAAATTGTTTTGATTTTTAAAGTATTTGTTATTATTTTGTTTGAAAATACACATACTGAAAGTTGTATCAAAAGAATAACTGATTGaatcagccaacggcaaatgttgtcgaggctacggagaagaaggaacccttctccac | - |
fa1_utr3_1_000161120742_000161120997 | chr1 | 161,120,742 | 161,120,997 | utr3 | Odobenus rosmarus | Odobenus_rosmarus | GCF_000321225.1 | 9,707 | Odobenidae | mammals | 1 | zoonomia_cactus | KB229227.1 | 1,691,100 | 1,691,355 | + | 1,941,634 | 1,691,227 | 1,691,228 | 1 | 1 | CAGGCCTGACCTCTACGGCACTCTGGGCCACCCGCTGTCTTAAGACTTTGACTTCTGGGACTTGAGACTCCCACTGTGGGCTGGCGTGGCCGGGACCTGAAGGCAGGGCCCAGGCGCAGCTCCCCTCACTTGAAGAACCTTGACTTTCTCGATGGAACACAGGCTCAGCTTCTTGGGAAAGAAGAAACTTTCACCTGAGCTCAGATTTCAGCTTCAGAAAGGTGGAATTTTATATAGTCACTGTTTATTTCATGA | + |
fa1_utr3_9_000002654357_000002654612 | chr9 | 2,654,357 | 2,654,612 | utr3 | Paradoxurus hermaphroditus | Paradoxurus_hermaphroditus | GCA_004024585.1 | 71,117 | Viverridae | mammals | 1 | zoonomia_cactus | ParHer_flattened_line_48620 | 18,645 | 18,900 | - | 24,401 | 18,772 | 18,773 | 1 | 1 | CTAGCCAAATTACAGGCTTAGTTACACAACATCAAAATCTATATCATCTAGCTCATATAGTTTGTTAGAATGCTTGGTACTACTCAGGCTGTTTACAGAAGTTTATCCTAGAGGAATAGGCACAAACTGTGGGTAAGCTGCTTGGTTTAATTGTTTTAGCACTTGAAAAAAAATGTACAGTAGTTTGAACACTCAGTCTTTATAAACCTCTACTGAGGTCAAAGATTTCATTCATACGTACAAAATTAGTTTACA | - |
fa1_utr3_17_000041853105_000041853360 | chr17 | 41,853,105 | 41,853,360 | utr3 | Pelodiscus sinensis | pelSin1 | PelSin_1.0/pelSin1 | 13,735 | Trionychidae | reptiles | 3 | ucsc_multiz100way | JH210964 | 488,142 | 488,397 | - | 514,663 | 488,269 | 488,270 | 1 | 1 | CCCAGGTGCTGTCTCAAGTCCCATTTTAGTATGTCTCTGATGTTTTACCAGTCATTTGCTATAAGTAAATGCTGGCATTTCTACAAtattcagaaacaaaatatttcatacaGAACCATCTTGAAGTAATTTTATGAAAAAAGattgtgcttttatttttatacacAGGTATTCCTCTAACTATTTTATGTGCCTTCAATTTTGGAGAAGCAAGTGCACAGATTCCAAATGTATGCAACTTTCAGCTACTCAGGA | + |
fa1_utr3_1_000197156477_000197156732 | chr1 | 197,156,477 | 197,156,732 | utr3 | Orientallactaga bullata | Allactaga_bullata | GCA_004027895.1 | 1,041,416 | Dipodidae | mammals | 1 | zoonomia_cactus | AllBul_scaffold_5854 | 35,446 | 35,701 | - | 110,280 | 35,573 | 35,574 | 1 | 1 | TATACTGACAAAATAAAATATTCTCAATGAATCTAAACTTAGTCATGAGATACAAAATTTTAAGGACCAATATAATATAAGATGATTTTAGAGTTACACAAAGGTCAACTAAAGAGTGTATTCTTCATTTTATACTGTTTGTGCCAACTTCAAAAACATATATACATTCAGTTTGCCCAAACCTATGTTCTTACAGCTTTGGAAATTAGAGGCAGCAGGTTAATTTCTGTGTTATTGTCATTTTGTTTCTAAATT | + |
fa1_utr3_20_000003250693_000003250948 | chr20 | 3,250,693 | 3,250,948 | utr3 | Pseudopodoces humilis | pseHum1 | PseHum1.0/pseHum1 | 181,119 | Paridae | birds | 2 | ucsc_multiz100way | KB221190 | 50,656,687 | 50,656,942 | + | 51,152,410 | 50,656,814 | 50,656,815 | 1 | 1 | GTTCTGAGCTCTTCTGCTCCAGTTTTTAAGGAACAGCTCAATTTGCACACTCAAACcccaattatttcttttttttgtttgttttttgttcacAGGGCTTGGAATTCCAGCTGGATCAGCCCCATCCATATTGAATTGAGAGCTGCACAAATTGGAGTTCTTAAAAAGAGTTCAGCAGAGCAAAAAATCAGCTACAGCATCTTCATCTATTTTCAATCAATTGCACTTAAATCTACTCTGTATCCACTCACGTGT | + |
fa1_utr3_17_000040091481_000040091736 | chr17 | 40,091,481 | 40,091,736 | utr3 | Nannospalax galili | Nannospalax_galili | GCF_000622305.1 | 1,026,970 | Spalacidae | mammals | 1 | zoonomia_cactus | KL199983.1 | 101,776 | 102,031 | + | 541,876 | 101,903 | 101,904 | 1 | 1 | CCCTGTATTCCTCCAGTCCCATGGGTAAACCCTCTCGGCCTTTCCTCCCACACCTGGGGGCCCAGTGGAGTTCCTGATCTGCCTgctgtctccctccttcccctggcCCCACTCTTCCTCTCCATTCCCATTCTCAGCCATAGGCACTTGGgaatcccctccccctccccagtcaCTTGAGCTGTGATCCCCTAGCCTAGGCCCTTCCCCCTACCCTCAGTGGAGTGTATGTGTGAGTTcctctgtgtgaatgta | + |
fa1_utr3_10_000060028581_000060028836 | chr10 | 60,028,581 | 60,028,836 | utr3 | Panthera onca | Panthera_onca | GCA_004023805.1 | 9,690 | Felidae | mammals | 1 | zoonomia_cactus | PanOnc_flattened_line_12752 | 84,445 | 84,700 | - | 112,406 | 84,572 | 84,573 | 1 | 1 | GCAGCCTTATTAACCTAATATGACACTGCTAGAATGGTTACAAATGATTGGCTTATTCAAAGGTGTCTACATCTTATAGCCAGTACACAATACAGTAATAATTGTACAGCGTGCTGCCATTCTACGAGCTAAGAATTTCTGTTTAGTCCATTTTAAATACCCCCGACTGGGGCCTCTTATGAGCACCATCCACCTCTAAAGCGGCAAGCATTACCCCCTTTTAAGCACTAACAGCACCCACCCTCCCCCTAAAGC | + |
fa1_utr3_9_000072354591_000072354846 | chr9 | 72,354,591 | 72,354,846 | utr3 | Tupaia tana | Tupaia_tana | GCA_004365275.1 | 70,687 | Tupaiidae | mammals | 1 | zoonomia_cactus | TupTan_flattened_line_25997 | 2,726 | 2,981 | - | 21,001 | 2,853 | 2,854 | 1 | 1 | CAGAAAATTGAAAGCAAAACTGAATGCTTTAATAAAAGTAAAAGCTAAGGCTGAACACTGTAATAAATCAGAAGTAGTGCCTCGTGTACATACTCAACTATTCACAGATGAAAACAGGCATTGCCACAACACTAATCTAACCATACTCATTTAGGTATCACAAAACACAATTATCAACAGCATTCTACAAAAACAACTAGAAAAGGGTTCATTTTTAAAAAAATCCACTGACTTCTCTCTACCATACATGTTATT | + |
fa1_utr3_12_000051810606_000051810861 | chr12 | 51,810,606 | 51,810,861 | utr3 | Geosciurus inauris | Xerus_inauris | GCA_004024805.1 | 3,371,099 | Sciuridae | mammals | 1 | zoonomia_cactus | XerIna_scaffold_1138 | 66,293 | 66,548 | - | 283,829 | 66,420 | 66,421 | 1 | 1 | CAAAGCAGCTCATTGAGGAAGGAGCAAGAGAAGGTTATGTTGACTTCGAAGTTGTTTTCTGCTCTCACCCTCTGCTTTAAATTATGGACTCTCCTCATCCTAAGCAACAAGGAGGTTAAGGAAAGAAGAGGGGGAAAGTGTTTTTCACACACAAACCAGCAACCATGTCAGCTGCTGCTCAGTGGCTTTGGCTCTGCATTTTAAATTAACAGCATCACACATCTTTTTGCTTTTTGTCCTTTTTTAAAAGGTGGA | - |
fa1_utr3_14_000073701167_000073701422 | chr14 | 73,701,167 | 73,701,422 | utr3 | Enhydra lutris | Enhydra_lutris | GCF_002288905.1 | 34,882 | Mustelidae | mammals | 1 | zoonomia_cactus | KZ291767.1 | 20,176,489 | 20,176,744 | - | 33,646,359 | 20,176,616 | 20,176,617 | 1 | 1 | AGAGGGGAACCAGCCAACCAAATTCTGATCCAGCAAATTTAACAAGGGAGTGGGGGAGAATGAACTATTTTGCAGTAGATTTgcactttaaaattataaactggaTGTTGGTGGAAAGTGCTCCCAAAGGGCAGATAGGTAAATACCTAGCCTGCACGTGGATATTGGAGAATCCAACTTCGTCCTTGCTCGTTCTAAGCCCACCTGCGCAGTAGTTGTCTGTTGACATAATCAGAGCCAGGATTTCCCTGTGTC | + |
fa1_utr3_11_000002944408_000002944663 | chr11 | 2,944,408 | 2,944,663 | utr3 | Alligator mississippiensis | allMis1 | allMis0.2/allMis1 | 8,496 | Alligatoridae | reptiles | 3 | ucsc_multiz100way | JH735916 | 480,919 | 481,174 | - | 1,611,438 | 481,046 | 481,047 | 1 | 1 | GAAATTTTATGGACAAGACAACCATGACTTTTCATGTTTCACAACTTTAATAGAATATTCTAACTATTCTGTACAAATTGAAAACACCGTATTAAGTTACAAATGTGTAAGGTAAGGCTGGAGCACTCTACATGCCTGGTCACAGTGTTGATACAGTTGCTATTCAACTGATGCCAGAGATTGGCATTTGGATGCTCAAACTAGAAATGTGCACCTGAAGTACTGCACAACAACAACAGGTAGTTTTGAAGACTT | + |
fa1_utr3_2_000138569185_000138569440 | chr2 | 138,569,185 | 138,569,440 | utr3 | Chrysochloris asiatica | Chrysochloris_asiatica | GCA_004027935.1 | 185,453 | Chrysochloridae | mammals | 1 | zoonomia_cactus | ChrAsi_scaffold_180142 | 4,168 | 4,423 | + | 10,617 | 4,295 | 4,296 | 1 | 1 | ATGGAAGATCCTTTTGAAACTTAATATCTTCAGTTATCAGTATTACTGCATTATGGAGCTAGTGCAATCCTGCATAGCCTTGGTCAAAATGACAAGGCACAATAAAAAATTAAAGTATTATATGAACAAGAGAAGTCACTGAAGATAATTTAAGGCCTTGAAGTGAATTAGAGTACAATCAGTCTAATTTAAAGCTGAAGAATAAACCATAAATTATCCACCCGAAAAGCTAGCAATATGCTTTTTCAGTTTCTG | - |
fa1_utr3_3_000047344686_000047344941 | chr3 | 47,344,686 | 47,344,941 | utr3 | Hippopotamus amphibius | Hippopotamus_amphibius | GCA_004027065.1 | 9,833 | Hippopotamidae | mammals | 1 | zoonomia_cactus | HipAmp_scaffold_7960 | 83,072 | 83,327 | + | 137,788 | 83,199 | 83,200 | 1 | 1 | CTAAGCCTGTGATTAAAAAAGTCCTCTGATAGTGGGTGTGAAGACAAACCCCATGAGCACCTTGCTACAGGACTGGTCGAGAGTGCACTGATTCCGGACACGTGGGGGCTCAGAGGGAACCCTGAGTGCCATGCGAGGCCTTAGGACCCTGGGATCCGAATGTGGGAGCGGATACCACCCTTTCCACGTTGGGTGGTTTTCCATTCAAACACAAATTTGCCTTTAGTGTCTTTTATGTTTTCTTCTTGCAAAAAA | - |
fa1_utr3_11_000066665487_000066665742 | chr11 | 66,665,487 | 66,665,742 | utr3 | Daubentonia madagascariensis | Daubentonia_madagascariensis | GCA_004027145.1 | 31,869 | Daubentoniidae | mammals | 1 | zoonomia_cactus | ctg156 | 1,711,945 | 1,712,200 | + | 2,394,800 | 1,712,072 | 1,712,073 | 1 | 1 | AAGCAATGGAAACATCCCGGCAAAGGGGACCGCGCGGAGCAAGTTCTCATATATGACCGCAGCCCGAGGGTTCAGTCCGCAATTATCCTACCTGAAAGAGAGCACAACACAAGAGGCTTACACAATGCCTGGAGAGCAGCTTGGCTCCGAGTACAAGGACCCTGGTCTCGTCCTGTATTCCAGGGGGGAAAAAAAAAGAACAGAACAAAACCAAGTCAGACTGGATCAAACTTATATCGCGTGTAATTACCCCTA | + |
fa1_utr3_19_000039825457_000039825712 | chr19 | 39,825,457 | 39,825,712 | utr3 | Otolemur garnettii | Otolemur_garnettii | GCF_000181295.1 | 30,611 | Galagidae | mammals | 1 | zoonomia_cactus | GL873752.1 | 1,281,541 | 1,281,796 | - | 2,035,133 | 1,281,668 | 1,281,669 | 1 | 1 | CCCTGCCCCTTTCCTGGGGCCCCTCCTGAAGCCATACCCCCCCATCTGGGGGCCCTGGGCTCCCATCCTCATCTCTCCCCTTGACTGGAATTGCTGCTACCCAGCTGGGGTGGGTGAGGCCTGCACTGAATGGGGCCTGGGGTAGGGGGTCAAGGAGAGGGATTTGGCCGCACCCTCCCCACTAAGGACTGAACCCTTGGCCCCCTCCCcccttgttttctatttattgtacCAAAGACAGTGGTGGTCCGGTGG | - |
fa1_utr3_6_000107659082_000107659337 | chr6 | 107,659,082 | 107,659,337 | utr3 | Melopsittacus undulatus | melUnd1 | WUSTL_v6.3/melUnd1 | 13,146 | Psittaculidae | birds | 2 | ucsc_multiz100way | JH556631 | 2,253,010 | 2,253,265 | + | 17,573,784 | 2,253,137 | 2,253,138 | 1 | 1 | ATCTGAGGGGAATATTTGCTGGGCGTCACGAAAGACTTGGATGAAATTTCAACCCTGATGGTTTTCAGTGATCCAGGAAGGCAGTGAGACAATCTCTCCATATGCATAGCCCTTTCATGATAATTAGAATGGTATGGACAAACCAATGAAAACAAGGGTAAAGTGAGAAAGATCCCCCATGATTCTGtttcactgtttgctttctcctgtCATGGTTAAGAGAAATGTGCAATTCGATCCTCAATCAGTGGGTGG | + |
fa1_utr3_10_000027111603_000027111858 | chr10 | 27,111,603 | 27,111,858 | utr3 | Spilogale gracilis | Spilogale_gracilis | GCA_004023965.1 | 30,551 | Mephitidae | mammals | 1 | zoonomia_cactus | SpiGra_flattened_line_11782 | 2,995 | 3,250 | - | 105,797 | 3,122 | 3,123 | 1 | 1 | gaggtagaagcaggcttcccaccgagcagggaacccaatgtggggttcgatcccaggaccctgggacgatgacctgagctgaaggtagatgcttaacaactgagccacccaggtgccccAAAAAGAGCTGATTTTTAACAGTGGCCATGCTTTGCTTTTTTGTAGCCCTGGAGTCTGCTGCTTGACTCTGGCAATGACCATCTGTGTGGTTCCGGAAACTGTAAGAACAGGAGTGGAGCAGAGTATATGTGAAGT | - |
fa1_utr3_5_000109196512_000109196767 | chr5 | 109,196,512 | 109,196,767 | utr3 | Myotis lucifugus | Myotis_lucifugus | GCF_000147115.1 | 59,463 | Vespertilionidae | mammals | 1 | zoonomia_cactus | GL429767.1 | 15,999,712 | 15,999,967 | - | 64,990,205 | 15,999,839 | 15,999,840 | 1 | 1 | TCTGGCTTGTAAGCAAGTCTGAAAATGAATGGGGCTAAATAGATAAAGCAGCCCGTTGTCTTTTACCATTTTTAACTCAGATCTGTATTTaacacttatttatttgttagttttttttttacattcagaaAAAATACACTTTGAACTTTGACTAACATTgtagaatgtttttaaattgttttctacttttttaaaacgTGATTTCATCATTTTTGTAAACATTGATCATTTTTGAATAGTTTTCTTTTCCAATGG | + |
fa1_utr3_17_000082033806_000082034061 | chr17 | 82,033,806 | 82,034,061 | utr3 | Spilogale gracilis | Spilogale_gracilis | GCA_004023965.1 | 30,551 | Mephitidae | mammals | 1 | zoonomia_cactus | SpiGra_flattened_line_27764 | 54,500 | 54,755 | - | 55,742 | 54,627 | 54,628 | 1 | 1 | AGCCAGGAAAGAAGTGCACAGTCTTCTAGAGCCTGCTTCGGGAGGGGCAGCCCCGCCCAGCCCCCCCCCCCCGTTTGCTGTCGTGTTGAGATGTCTGGTGTCCCTGAGTTTGCTGTGGGGGAGTGGTGTGGGTGGGGAGGGGGAAGAAGCATGGGGACGAGGCCACCACTCCTGGGGACAGGGCTGGGGCAGTGGGGTCCTGTCTGCTCTGTCTCCTCTCTGGGGTTACAGCTCCGGCTTTACCTGGACCCCATG | + |
fa1_utr3_1_000033299151_000033299406 | chr1 | 33,299,151 | 33,299,406 | utr3 | Choloepus hoffmanni | Choloepus_hoffmanni | GCA_000164785.2 | 9,358 | Megalonychidae | mammals | 1 | zoonomia_cactus | KN186322.1 | 116,469 | 116,724 | - | 339,929 | 116,596 | 116,597 | 1 | 1 | TGACCTTCCTGACCTTCCAGAAGGCCTGGGCCACTGAAGCCCTGCCTGGTCTGGCTCCTGGGGCAGCCAGGCCAACTGCAAGATTCTGGACTGTTTTGGTGGCATCCAAAGACGATTCTCAGAGCACTTTGAACCTCTTTGTTGAGTTCTCTTTTTGTTCCCCACCCTTCACtttcttcactgttttttttttttttttaatttgttttggaagaatcaaaaaaaaaaaaaaaagatatttattggCCAAGAAGT | + |
fa1_utr3_4_000082425232_000082425487 | chr4 | 82,425,232 | 82,425,487 | utr3 | Vicugna pacos | Vicugna_pacos | GCA_000767525.1 | 30,538 | Camelidae | mammals | 1 | zoonomia_cactus | KN267643.1 | 855,464 | 855,719 | - | 4,534,976 | 855,591 | 855,592 | 1 | 1 | tttaatctttttgaagaTTAAGTGTCTTAACTTAAATGGTTTTTTACAGGAGTTAAAGTACATAAATGCCTTTTTACAGCTTAATCATTTTGGTCTTCTGTTTAGTGTTGTATTTCAATTGTGGAGCCTCATTTTAAGTGTTCATTCTTTAAGATTtaatgcttgctttttctttttatagctaaTAGTGAAATCTACAAACCAAAACAAGAACTTTAAAATCTGGGATATAAATTAAAGATCATATGCACATAG | - |
fa1_utr3_20_000050891089_000050891344 | chr20 | 50,891,089 | 50,891,344 | utr3 | Kogia breviceps | Kogia_breviceps | GCA_004363705.1 | 27,615 | Physeteridae | mammals | 1 | zoonomia_cactus | KogBre_flattened_line_1474 | 61,066 | 61,321 | + | 128,440 | 61,193 | 61,194 | 1 | 1 | CAAACATTTTACAGAGGGAAAGAAATGTTGAGAAGGCAGATAAAATAAACCTCTGCTTTTTCTCATGTGCGTTCATGAGCCCCCGACTTACTGGTTTTTCACATTTAGTTACTGTGCCTGTCACAGCACGTTCTAAAGCAAGATCAGCCAATCGTGTGTCATAGACTTAGAAATAACCACTTGGATCGGAGTGGCCGCGTGTCCCCACAGCCTGATGAGCCAGCACTCAAAAGGCAGTACCAGTTCGAATACAGC | + |
fa1_utr3_11_000009447091_000009447346 | chr11 | 9,447,091 | 9,447,346 | utr3 | Indri indri | Indri_indri | GCA_004363605.1 | 34,827 | Indriidae | mammals | 1 | zoonomia_cactus | k141_4076336 | 8,402 | 8,657 | + | 9,005 | 8,529 | 8,530 | 1 | 1 | GAAACATTCTCGTCTTCCTTTACCTTTTGTGCCCTAATACCTAGTCTACTTTTTAAATTTTCAGAATTCATTGCTCTTTGAATTGATAATTCCAATTTTCACATTATTGTTATTGGAAAATCATATCTAATAAAGGTTTTAGTTATTCCCATGCACAGTATGAAAATTCTCATTTGAGGTTTTGCTTCAAGAAAATGTATTGGCATGTCTTTGAGAACATGTTTGTCTCTTGTGTCACATAATCCAAGCTAATCT | + |
fa1_utr3_8_000018527666_000018527921 | chr8 | 18,527,666 | 18,527,921 | utr3 | Mungos mungo | Mungos_mungo | GCA_004023785.1 | 210,652 | Herpestidae | mammals | 1 | zoonomia_cactus | MunMun_flattened_line_5865 | 192,908 | 193,163 | + | 234,358 | 193,035 | 193,036 | 1 | 1 | GTGCCATATCTCTCTGCAAATTGTGAAAGTAATTAGTGACAAAATAGCAGCCTACTCCTTTTCAGTAGCCAAACTGTCAGCATTAGCAGACTTAGGTAAGCTAGTGGGACTGAATTATGTACTGGAAACCTGTTCCTCCTTATCAGCCACCAGACTGAAGAAATGCCATCTCCATATAAAATTATGGCATTTATGGCAGTCATCTTTGTAATGGAATAGGCGTTTATGTAGGTATTGCTAAGGTGTTTAGAGAAT | - |
fa1_utr3_2_000038985343_000038985598 | chr2 | 38,985,343 | 38,985,598 | utr3 | Otolemur garnettii | Otolemur_garnettii | GCF_000181295.1 | 30,611 | Galagidae | mammals | 1 | zoonomia_cactus | GL873560.1 | 7,438,948 | 7,439,203 | + | 14,687,976 | 7,439,075 | 7,439,076 | 1 | 1 | TGAGGCCACAGAAGACATAGTCCACACAGAGAGCTTGGCAGAAGCAAGCATCTGAGTATGAGCCATACCAGCGATGGTCTCTGTCTGGCCTGGTCACCTTTGGTCAAGGTCATCAGGTGCAGGGTGCCCAAAACTAAAGGTATTGCCTCCAAACAAGGGAAGTTTGTGTCACTAAGGTGACAGAAGAACTTTTTAAACACTGTAGCTGTCAAGTATACTATTTACTTGCTGTCAAGTATACTATTTACAGGAGAC | - |
fa1_utr3_22_000039130751_000039131006 | chr22 | 39,130,751 | 39,131,006 | utr3 | Sus scrofa | Sus_scrofa | GCF_000003025.5 | 9,823 | Suidae | mammals | 1 | zoonomia_cactus | CM000816.4 | 6,372,197 | 6,372,452 | - | 111,506,441 | 6,372,324 | 6,372,325 | 1 | 1 | TGTTCTGACTACATGAATGTATTCGGGAGGGTTGGGGGCGCGAGTCGGTTCAAGCACATGCCTTTGCTGAGTGCGCGTGTGCAGGGAGAGCTAGAGCGGATGCagagtgtgggtttatttttgtactGATATTGGTAAGAGACTGTACAGCATCTATTTATTTAGATGATTTATCTGGTAAACGAggcaaaaaattattaaaaatacattaaagatgattttaaaaaaacctctcgGGCACTCGATCTTTCCTTG | - |
fa1_utr3_14_000063291513_000063291768 | chr14 | 63,291,513 | 63,291,768 | utr3 | Indri indri | Indri_indri | GCA_004363605.1 | 34,827 | Indriidae | mammals | 1 | zoonomia_cactus | k141_4603372 | 6,854 | 7,109 | - | 20,766 | 6,981 | 6,982 | 1 | 1 | GACTAATTTCCAGTTACTCAGGCATTACAAATCCATACCAAATTAGCCTAAAGACGAGCCGTTTTATATCCATTTCTATTTTCAGCATGTTTCTACCAAAGCTATTAGAACCAACACATACCTCTGAATGCCTGATCACAAGAAGACCCAAGAAAACTTTAAGAAATTAACAAAGCCATGATTTTTGGAACCTGGTTGAATGCAAACACCATCTGAATTGGTGCAGGTCCACATTTTTTGCCAAAGATTCACACT | + |
fa1_utr3_13_000071438713_000071438968 | chr13 | 71,438,713 | 71,438,968 | utr3 | Cavia porcellus | Cavia_porcellus | GCF_000151735.1 | 10,141 | Caviidae | mammals | 1 | zoonomia_cactus | DS562860.1 | 50,046,199 | 50,046,454 | - | 61,868,410 | 50,046,326 | 50,046,327 | 1 | 1 | AACCGGCTAAACCCATTTTAATACAATTGAAAGGTTATATGTACAGCTCCTATTTTAGCTTGCTTTAAAAGGgggcaatattttttatttaagatattGTTAGTAAATGCTTTGTAGAAATTTGGTTTTCTAAGCATAGCTTTTCCATAACCATCTTTTGTTGAGTACAAGAGATTCTGCTCCTCCTACATTGTGTGTTTGTTGTTTTCTCCTATATGCAGTCTTTAAAGGATTACAACGTTTAAAATTGGATTG | - |
fa1_utr3_15_000035519485_000035519740 | chr15 | 35,519,485 | 35,519,740 | utr3 | Dasyprocta punctata | Dasyprocta_punctata | GCA_004363535.1 | 34,846 | Dasyproctidae | mammals | 1 | zoonomia_cactus | DasPun_flattened_line_24534 | 18,348 | 18,603 | + | 57,232 | 18,475 | 18,476 | 1 | 1 | GATGCAACAGTGCCCTCTATAGTCTTTTAGTGAACAGTAAATAGATGTATTTGCTGTGGAATATTCAGGTAAGAAGCAGGATATTTAAATTTAATTTCTGCTCAGACAAAAGACCCTTTTTTCCTAAGTAGACAATCTTGTTTTTCTCTCGGGGCTTTACTTTAAACAAAGGGAACAAAAGACCATTCTGAGTTTTCATTTAGAATTATTGGCTACCTCTTGTTACCCAGTGGTAAATCTCAAGTTTTATCTGAC | - |
fa1_utr3_16_000071729235_000071729490 | chr16 | 71,729,235 | 71,729,490 | utr3 | Aplodontia rufa | Aplodontia_rufa | GCA_004027875.1 | 51,342 | Aplodontiidae | mammals | 1 | zoonomia_cactus | AprRuf_scaffold_25877 | 7,438 | 7,693 | - | 52,235 | 7,565 | 7,566 | 1 | 1 | TAATATTTTTACAGTAAAGAAGATGTGATGGGGCTTAATGAAAAGTTTAACTTACAACATGAAAGGAAAAGGGTCTTTTACAGGAACACGGTGGGAATTCACACAGGAAAAAGTTCAGAAGCTGTTTCCCATGAGGTCTTCAAATAAAAACACAAAGCGCAAACGCAGGTTCTTAAAAAAAAAAAAAAAAAAAAAACTCCAATGCTCCATCTTGAAGCCAGAATCGGCCTGGTGGAAGTTTGTGAAGCAACTCAC | + |
fa1_utr3_8_000093924674_000093924929 | chr8 | 93,924,674 | 93,924,929 | utr3 | Mungos mungo | Mungos_mungo | GCA_004023785.1 | 210,652 | Herpestidae | mammals | 1 | zoonomia_cactus | MunMun_flattened_line_14603 | 60,933 | 61,188 | - | 92,450 | 61,060 | 61,061 | 1 | 1 | TGTTGAGACCAGGGAGGGAGGTTTTGTTTTTCCTCCATGTAGCCATAGGTCAGTTAAAATACTTGGTTTAAAAATCACTAAATGCTTTAAACATATTGTAGCTTATAAATAGGAATCTTAAGATATATACGTGAGACATTTTAAAAGGCAACTGTGGTGCATGCCTGATGCTTAATAGAACACTTAGTAGCATCAAGTGTCATATGCGGCAGTCCCTGTAATTAATGCAGTCCCTTCTAATGCTGTATCAAAATA | + |
fa1_utr3_4_000091600954_000091601209 | chr4 | 91,600,954 | 91,601,209 | utr3 | Nesogale talazaci | Microgale_talazaci | GCA_004026705.1 | 2,583,312 | Tenrecidae | mammals | 1 | zoonomia_cactus | MicTal_scaffold_8992 | 38,842 | 39,097 | + | 124,435 | 38,969 | 38,970 | 1 | 1 | AAGAAATGTTAGGAAAATAGTAAAATCATGATGACTAATTGTGGAAGTTAGCTTGATTTTCCCTGAAAGTTGATGTGTGTTGCAATCGTATCTAAAATATGTAAATAAATGAGCATGATAACATAATCAAGGATTTTTTTCCCAGGATATGGAAATACTGTGTATCACAAATAATGTTTTGATTTAAACCTTTGGAGTTTATAGCTTTGTTTTTCTGCAAAATAGACTTGGATTATGCTTTGTAAAAATAATCTA | + |
fa1_utr3_8_000041654095_000041654350 | chr8 | 41,654,095 | 41,654,350 | utr3 | Erinaceus europaeus | Erinaceus_europaeus | GCF_000296755.1 | 9,365 | Erinaceidae | mammals | 1 | zoonomia_cactus | JH835474.1 | 3,755,764 | 3,756,019 | - | 3,992,674 | 3,755,891 | 3,755,892 | 1 | 1 | GAGGCCCGGGGCTGGGCTGGAAACCCGCCTCGGCTAAGCCCCAGTCTGGGGCAGCAAGGAAACTGCTGGCTGGCTGTTCTTCGCCTCGGTGCCATCAGGGAAGAGCCTTAAAGTTACACTAGAGCCTCCGGCGGAGGGAGGCCCGAATCAGCACAATCCTGGCGCCGCCCTGCCGGACGGGCACCCCCTTCGGGCCAACAGAAGGACTACTGCTAGGCTCTTCTACTCGCACGGGAGCCTGGGGGGGCGGAAGTC | - |
fa1_utr3_17_000048070927_000048071182 | chr17 | 48,070,927 | 48,071,182 | utr3 | Lycaon pictus | Lycaon_pictus | GCA_001887905.1 | 9,622 | Canidae | mammals | 1 | zoonomia_cactus | CM007573.1 | 24,364,272 | 24,364,527 | + | 61,073,796 | 24,364,399 | 24,364,400 | 1 | 1 | AGGCAAAGGGCCTTCCATGAAGGACAGAACTTGCAGAATGGGTGTGTGGGAGAGCAAAAGATACTGTAGATCTTCAAAGTGCATCTCCACAACCCACAGCCTTCTTCCCAATAGTGTTAACTCTGCATTTTTACAGCGTAGCATGTGtgtagtttttggctattactgGTGTAtcatttgggggtgggagggttgggggtgggaaggaacGGAGATGGGTAGgatcatttttgttaaaatttgggGCCTGATTGG | - |
fa1_utr3_8_000058582229_000058582484 | chr8 | 58,582,229 | 58,582,484 | utr3 | Odobenus rosmarus | Odobenus_rosmarus | GCF_000321225.1 | 9,707 | Odobenidae | mammals | 1 | zoonomia_cactus | KB229069.1 | 3,156,211 | 3,156,466 | + | 3,180,472 | 3,156,338 | 3,156,339 | 1 | 1 | AACTAAGCAGCTATGCTATAGCTCAGTATGTACCATTAAATTGTTCTGGGTCAGTGTACATTTCAGTTTAACATAGAACTGCATTTTGGGTTTTAGAAAGGCAGCAATAGttatattttggcttttattctagATGCTTAACAGTTAAGGCGACAGTTGAAGCATATTAAGTAAAGGCAGTTAAAATTAAACTATGATCAACACAATCTCTTGCAACCTACATACACTGTATAATGCTTACGTGGAATGAAACCA | - |
fa1_utr3_4_000015067765_000015068020 | chr4 | 15,067,765 | 15,068,020 | utr3 | Daubentonia madagascariensis | Daubentonia_madagascariensis | GCA_004027145.1 | 31,869 | Daubentoniidae | mammals | 1 | zoonomia_cactus | ctg31 | 11,114,165 | 11,114,420 | + | 18,626,795 | 11,114,292 | 11,114,293 | 1 | 1 | TTTGACCTGTGTATATTGGGGTCTTCTGTCTAAACTGGGGTCACTGTTGCATGGAACATTGTTGTTCTTAATGGTTAAGAATTGCTTTTTTAAATTTTGATGAAGGAATTTTGGTAATGACTTTGCTTGCAGGTTTTTTTATTTTTCTTTTTGAGAAAGTGGCATGGAAACATGCAATAGTTAATGAGTTTCTCTTGGTACTGAACACTATTAGAATATCATTAGTAATATTTTTTCTCTTTAGAGCATTTTTAA | + |
fa1_utr3_1_000109498796_000109499051 | chr1 | 109,498,796 | 109,499,051 | utr3 | Aplodontia rufa | Aplodontia_rufa | GCA_004027875.1 | 51,342 | Aplodontiidae | mammals | 1 | zoonomia_cactus | AprRuf_scaffold_18154 | 14,445 | 14,700 | + | 65,474 | 14,572 | 14,573 | 1 | 1 | TGCCCTTTTGCCCTTGTTCCTTCACTAGAGAAAGCTGCTAGTAGTCAGCCTATTTTGCTTTTTCAAAGAAAAGCCAGGGTGCTCAGATTTAAAAAATAAAAAAATTGCCTGTCATTTGCACAAATTTCCATATTGGGTTCACTAAGTCCTGATTCCATGTTTGATTGTGTTCCAAGTTTGATTATATTCAGACTCAACCTTGAGGACATTAGAAATATACATGGTTTATATCCAAAAGCAAATGATAGTGGAATT | + |
fa1_utr3_1_000167424619_000167424874 | chr1 | 167,424,619 | 167,424,874 | utr3 | Anas platyrhynchos | anaPla1 | BGI_duck_1.0/anaPla1 | 8,839 | Anatidae | birds | 2 | ucsc_multiz100way | KB742931 | 932,134 | 932,389 | - | 4,102,838 | 932,261 | 932,262 | 1 | 1 | NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNagcggggggctggggggctgcctgcgggctggggaagggcagcgcagccctgtcccgcgggctggggaggggggcgGATATTCACAGACTGATCAAGAGGACCCCTTGTAACCAAAGGAAATAAGATACGATTGCAATTTGCCCTCACTTTGCAGTAGCTTTTAAGCAGCGACATTCAGAGGCGTAAGGGGGTCGCTCCCCGGGCTGCAGGTCACGGGGTGCTAT | - |
fa1_utr3_4_000013569357_000013569612 | chr4 | 13,569,357 | 13,569,612 | utr3 | Melopsittacus undulatus | melUnd1 | WUSTL_v6.3/melUnd1 | 13,146 | Psittaculidae | birds | 2 | ucsc_multiz100way | JH556594 | 3,922,613 | 3,922,868 | - | 12,630,573 | 3,922,740 | 3,922,741 | 1 | 1 | GGTCCCTTTCACTATGCTAAACTACACTTTAATGCATGCGAGAAAAATACTTTACCAACTGTCAGCGCAGATTTAAGAGAACTTCAGGTTCTAGACAGCCTTGGGGGAGTGGAGGGGAAGTCTCCTACTGACGTCTGCAtagaatgtaaaatatataattaaaaaaacctaagGTATATACTAAAGTTTACAGACCAATGCTTTccatataataaataaaatgttcatCGTCGATTAGATTCATACACAGAGTAA | + |
fa1_utr3_11_000095976961_000095977216 | chr11 | 95,976,961 | 95,977,216 | utr3 | Ceratotherium simum | Ceratotherium_simum | GCF_000283155.1 | 9,807 | Rhinocerotidae | mammals | 1 | zoonomia_cactus | JH767744.1 | 25,142,669 | 25,142,924 | - | 30,314,786 | 25,142,796 | 25,142,797 | 1 | 1 | CTATCAAAAGgttatattttatacaaaaagtAAATTGTTACCTTTTGTATGCTAATATACAAAGTTTTGTATAATATGATGGTTTATTTTTAGCTCTACACTTAAACCATAGGAGGTCAAGTGGGAACTTTTGAAAACTATCAAGAGGCTTGTTAGACAAATTTATACTCTGAAACCTCAATAAGAAAGCATTCCAGGTTTCaatcctttccctttttttttctttctgctcccaaATTCTTGTTTAAGCCCATA | - |
fa1_utr3_18_000076969468_000076969723 | chr18 | 76,969,468 | 76,969,723 | utr3 | Enhydra lutris | Enhydra_lutris | GCF_002288905.1 | 34,882 | Mustelidae | mammals | 1 | zoonomia_cactus | KZ291783.1 | 2,488,896 | 2,489,151 | - | 20,753,235 | 2,489,023 | 2,489,024 | 1 | 1 | ACAAAGTCCatacaatatttataataaaactgcTCTCTTCTGAAACCAGGGAGGCCATGAGACAAAATAAAGGCaattatttttcaagagaaaaacaaaagcaaaacaagccCCCCTTCATGTTGCAGTGAACAAGGTACCCATTTGTGACTCTGATGAGCACAGCTCTGGCCTGCCGTGCTCGTGGGGAGTCGGACTCTGACGCGCTCTCTCTGCCGTCAGGACGAGCGCTGCTATTTACAAAATATACCGTTC | - |
fa1_utr3_18_000055223188_000055223443 | chr18 | 55,223,188 | 55,223,443 | utr3 | Tadarida brasiliensis | Tadarida_brasiliensis | GCA_004025005.1 | 9,438 | Molossidae | mammals | 1 | zoonomia_cactus | TadBra_scaffold_614456 | 261 | 516 | + | 829 | 388 | 389 | 1 | 1 | TTATTTCATTTCATTTTGCATTGTCCATATAGTTCTGATTTTCTGTAAGTAAAACCACATCGATATTTCATTTTCCAAGTGTTGGAGGTATTGACAGCTTAACAAACAAAACATACCAAAAAAAAAAAAAAAATCACAAAAACAAATTGAAAAGCAAAGCACATGATTGACCAAGGAAGAGATGCCCTTAATGAAAATGGAACAAGATGCATGCAAAACAAAAAGGAAACTGTCTAGAGGATTAACTAATGGAAG | - |
fa1_utr3_6_000043287017_000043287272 | chr6 | 43,287,017 | 43,287,272 | utr3 | Alligator mississippiensis | allMis1 | allMis0.2/allMis1 | 8,496 | Alligatoridae | reptiles | 3 | ucsc_multiz100way | JH736338 | 1,060,581 | 1,060,836 | - | 1,169,602 | 1,060,708 | 1,060,709 | 1 | 1 | CTCCACATATAGGTGCCAGCAGGCCCTGGGCATGCGGACGGACACCTCGGGGTGCTGTATCCTGCTTCCAGGCACCAAGGTGCAGTGCCGAGACCTGCCCAGGGCAGGATGAGGCCCCTTGGTGCCCCCAATGAGGTTGCATGCCAAGAGCTGTACAAATGGCAGTGCCGTGACCACATGCTCTGCCTTGCCGGGCGGCTCCGAGTGCAGCTCCCGGCTGCTTGGATGCAGGCACAGGCAGGGCCACTGGCGGGA | - |
fa1_utr3_4_000157365624_000157365879 | chr4 | 157,365,624 | 157,365,879 | utr3 | Tupaia tana | Tupaia_tana | GCA_004365275.1 | 70,687 | Tupaiidae | mammals | 1 | zoonomia_cactus | TupTan_flattened_line_552 | 6,751 | 7,006 | + | 64,691 | 6,878 | 6,879 | 1 | 1 | CGCAGCCGCAGGCAGTAGCCCGTTCATACCCATGTCACGGTGCGTCCGTACCTTGCTCTGTCAGTGTGTCTGTGTGCAAATAAGTGAGAAGCAGTCCAACGCAAGTGCTGACAGCCGCCTCCAGGTTTTTTATCCGTTTTATATAAAAACTGTTATGGAAAGACCAAAATGTTTATGAACTATTCTTATGTAAATTTACAGCTGTCCTCTACTGTACCTTTTTGTTTACAGTATAGACCTGATTTTCTGCTGTGT | + |
fa1_utr3_16_000004257165_000004257420 | chr16 | 4,257,165 | 4,257,420 | utr3 | Noctilio leporinus | Noctilio_leporinus | GCA_004026585.1 | 94,963 | Noctilionidae | mammals | 1 | zoonomia_cactus | NocLep_scaffold_7716 | 39,102 | 39,357 | + | 152,488 | 39,229 | 39,230 | 1 | 1 | ctgcctctctcccttcccctctttctaaaaaaataatgaaataaaatctaaaaaaaaaaaaaaggcatGGTGGCCTTGGTTCCCCACCCTCCGCTTTCTTAACAAAATATAATAGCTCTCCTTGAACATAAGACCTCAAAACTATTTAAAAACAAACAAACAAACAAAAAACCCAACAAAACAAAAAGAGAGAGACAAAGACATTTTTGAGGGTCGAAGATAGGAAACCTGGAGGGAGAGATGGGGACCAGCTGG | + |
fa1_utr3_12_000053415825_000053416080 | chr12 | 53,415,825 | 53,416,080 | utr3 | Tupaia tana | Tupaia_tana | GCA_004365275.1 | 70,687 | Tupaiidae | mammals | 1 | zoonomia_cactus | TupTan_flattened_line_116409 | 7,926 | 8,181 | + | 9,343 | 8,053 | 8,054 | 1 | 1 | GTTAAGAGACAGAAATAAACATGTTTTAGGCACCAGAGATTGAAGCACCACCCCTCCCTCCCCCAACCCCCAGAAAGATGGACTAGGGAAGAGGAAGCAGGCTCTGGGGTATACACAGATGGGGGTATCCTCAGGTCATACTTTTCCCAAAGTCTTTGTGCCTTAGACTCTAGGTAAGGGCTATGGGATGTTACTAGGAGAAAGGGATGATCAGAAATGTGAAGACTGCTCTGTCCACACTGTTCAAGAGCAGTT | - |
fa1_utr3_X_000050367816_000050368071 | chrX | 50,367,816 | 50,368,071 | utr3 | Myotis lucifugus | Myotis_lucifugus | GCF_000147115.1 | 59,463 | Vespertilionidae | mammals | 1 | zoonomia_cactus | GL429963.1 | 1,636,605 | 1,636,860 | + | 2,558,624 | 1,636,732 | 1,636,733 | 1 | 1 | TGGCCTGGCTCAGAATTTTAAAGAAGCGTCAGAATCAGCTGGGCTATAAGTATGTCCCAGCCACTTCAAAGACGCTGAAAATGCACCAAAAGATTGGAAGTTCCACCAAGAAGTCGGGCAGTTGGtagaggtatgtgtgtgtgtgtgcgtgtgcgtttgtgtAGGGTAATGGGGGTGGGTGATGGGATTAGGGTGGGGAGGGATTCCTGGGTTAGCACAATAAATTATAGGGTCACTTAGAGGTCGAGTTGTATT | + |
fa1_utr3_4_000107910786_000107911041 | chr4 | 107,910,786 | 107,911,041 | utr3 | Anoura caudifer | Anoura_caudifer | GCA_004027475.1 | 27,642 | Phyllostomidae | mammals | 1 | zoonomia_cactus | AnoCau_scaffold_856 | 434,388 | 434,643 | - | 489,669 | 434,515 | 434,516 | 1 | 1 | TACTCACAACCCTTGAGGCTCCCCCTCACTAACAGGCCTAATGCTAAAACCCACTCTCAGCATTGGGTTATTCTATTTACACAGTAGCTGTATCTGTCCAGAGAGTTTATTTAAAACATTAACAAATTCTTCCGACCTTGGAGGGGAAAAAAATCCTGAAAAAATTCTTTAGTGGAGGAGACTAAGGAAAGGCATAATGTGTTCTTTGGCACCTCTTTGACAAGCGCGCTAGTCAAATCCCAGGTGGAGGGCTTG | - |
fa1_utr3_1_000116988480_000116988735 | chr1 | 116,988,480 | 116,988,735 | utr3 | Mirounga angustirostris | Mirounga_angustirostris | GCA_004023865.1 | 9,716 | Phocidae | mammals | 1 | zoonomia_cactus | MirAng_flattened_line_12680 | 36,480 | 36,735 | + | 88,210 | 36,607 | 36,608 | 1 | 1 | ACTCATGCCCTGCATTGCAATCCTCTGTGCTTTTATCCTGGCTCTGACGAATCTAACACTGCTCTGTCTTCCGAAGGGAAAAAAGATTCGTTTGTTTTGAGCAATAAAGTCCTACAAAATGATGGCCATTCATGTGCGGCTCTTTGTCACAATGGGCCGGACGAGCCACACTCCCCCTCGGCTCACCATTGTCCCCTCCACTTCCCTCACTGTGCTGCCGACAGTCCGTTCTGCCCTTGTCACCGAGTCTCCCCT | + |
fa1_utr3_11_000014457441_000014457696 | chr11 | 14,457,441 | 14,457,696 | utr3 | Columba livia | colLiv1 | Cliv_1.0/colLiv1 | 8,932 | Columbidae | birds | 2 | ucsc_multiz100way | KB375313 | 4,963,593 | 4,963,848 | - | 13,020,934 | 4,963,720 | 4,963,721 | 1 | 1 | AAACACTTAAGCTATTACACACTCCCATCTTCTTAGACTACCAAAATACCCCACCAGATATTCAATACTGATCAAATAATACAGAGTTTATAATTTACAGACAAAACAGTACTGGCATAATTTGTTTATTGTACTGTGAGCATCAGTATATAttagagacaaagaaaacatgacttccagtacaaagaaaaaaacctggagATTTAAAATGTTGCTCAGTATCAATCATGGAGAACCTATAAATTATCTGCTGGA | + |
fa1_utr3_11_000077660628_000077660883 | chr11 | 77,660,628 | 77,660,883 | utr3 | Mus musculus | Mus_musculus | GCF_000001635.26 | 10,090 | Muridae | mammals | 1 | zoonomia_cactus | chr7 | 97,691,936 | 97,692,191 | - | 145,441,459 | 97,692,063 | 97,692,064 | 1 | 1 | AATCCAAGACATGTTCTGATTAGGTGCTTCCTGGAACTTAGTTACTACTTTAAAATTGAAGTGAGATTCTAAGATAAGACAATTTACAAACTCTTAGCTGGAATTTATACTCTTCACATTGAAACTCACGGCCCCTAAGCTTCTAAATGGATAGAAATAGCAAAGAAAATTATGTTCCAAATTAGTAGCCAGCAGATGAAGGTTACTTAGAAATTGTCACATTTAGATAAACCTAATTACTTATAAGAATACAGT | + |
fa1_utr3_10_000119831085_000119831340 | chr10 | 119,831,085 | 119,831,340 | utr3 | Giraffa tippelskirchi | Giraffa_tippelskirchi | GCA_001651235.1 | 439,328 | Giraffidae | mammals | 1 | zoonomia_cactus | LVKQ01S003014.1 | 110,613 | 110,868 | - | 131,805 | 110,740 | 110,741 | 1 | 1 | TGGTAACATCtaaagtttatataatatttagtaaGGGCTTTTACCTTACTGATTTTATGGagcttttgaattttgttttataattatataaattagtaACAATgtacaaaaatgtatttgatattaaaaatttaatattgataATGTTGCTGATATACCATTTCCTTAGTTTCCTTAGCTTCAGCTAAGTCATAGGCCAGACTCTGTTGAAATAGGAAATGTGAACATCATTTGAAGAAAACTGTTGCAATTCCA | - |
fa1_utr3_14_000092061475_000092061730 | chr14 | 92,061,475 | 92,061,730 | utr3 | Myrmecophaga tridactyla | Myrmecophaga_tridactyla | GCA_004026745.1 | 71,006 | Myrmecophagidae | mammals | 1 | zoonomia_cactus | MyrTri_scaffold_29609 | 28,333 | 28,588 | - | 55,540 | 28,460 | 28,461 | 1 | 1 | GCTGTGCACAGCATGTCAGGAGCTGCCATTTAACTGGAAACTCCCTGTAAGAAAGTCAGGTACTACTTAATTCACAGCAGCTGTCCTGCTAAGCACTTAAAATGATTTCCATTCTGTTTTACCAATTGGGAAAACCTTAATGTTTAATATTTAAACTATTGGTATTGTTTTTCTAATGTACAATTAGTATTAACAGAATATGTACAATGGTGATAACAGTGTTACAAGTAAAATTTAAACAAGCTTTGGAAATAC | - |
fa1_utr3_21_000034791620_000034791875 | chr21 | 34,791,620 | 34,791,875 | utr3 | Hippopotamus amphibius | Hippopotamus_amphibius | GCA_004027065.1 | 9,833 | Hippopotamidae | mammals | 1 | zoonomia_cactus | HipAmp_scaffold_4086 | 38,014 | 38,269 | + | 185,121 | 38,141 | 38,142 | 1 | 1 | GCTGTCCGCTCCACCACCCCGTGGACGCGTTGTAAGGCAAACAGGAAGATTCCCAGAGGGAAACTGTGAATGCTTCTGATTTAGCAATGCTGTGAATAAAAGAAAGATTTTATACCCTTGACTTCACTTTTTAACCAAGTTGTTTATTCCAAAGAGTATGGAATTTGGGGGTTGTTTTTTTTTGGGGGGGGGAGATGCAACTCATTCTGTTTGGCGTCTAATTCATGTTTTTAATTTTCTTTTCCAGCACCTTAT | - |
fa1_utr3_X_000100294439_000100294694 | chrX | 100,294,439 | 100,294,694 | utr3 | Octodon degus | Octodon_degus | GCF_000260255.1 | 10,160 | Octodontidae | mammals | 1 | zoonomia_cactus | JH651686.1 | 2,099,772 | 2,100,027 | + | 6,305,026 | 2,099,899 | 2,099,900 | 1 | 1 | CCCCCTCCCTCAATGCCCTTTCCCattccataaaagaaaatattcctagtATATGTATAAATCTAGGAACTCAagcaaaaataactaaaacattgAAAAGAGCTGACTTTATCCAGctaaacttaagaaaataaattctcttttgCATTCTAGTGCTCTAACCTCTAGACCTTCCTTTTGGGTACCcttagatttcaaaaaaaaaaaaaaacaactgtgaaGAAAAGCACAAAACCTGCTCTCTAGAAACAACTT | + |
fa1_utr3_8_000091959303_000091959558 | chr8 | 91,959,303 | 91,959,558 | utr3 | Moschus moschiferus | Moschus_moschiferus | GCA_004024705.1 | 68,415 | Moschidae | mammals | 1 | zoonomia_cactus | MosMos_scaffold_7351 | 34,556 | 34,811 | + | 106,998 | 34,683 | 34,684 | 1 | 1 | TTGCTCTGTGGAACCTTGCAAAAGTGAAGAAACGTTGAGGGTTGTTTAGAGCAGCTGGCTGGTGTCAAAGCTGCCAGGATGCTAATAACTGCAGGCTGAGTCTCTTACTTCTGTGTGTGTGTGTATATATACTTATATATATATATATATAAAGGAGCCTTTTGTGTTATGGCATTTTTTTCTTGCTGTTGTGTTCACATATCCCACTGCAAAATCATCTTTCATTTTTCCTTCTGTTGACCTGGATATTATTAT | + |
fa1_utr3_X_000124376394_000124376649 | chrX | 124,376,394 | 124,376,649 | utr3 | Muscardinus avellanarius | Muscardinus_avellanarius | GCA_004027005.1 | 39,082 | Gliridae | mammals | 1 | zoonomia_cactus | MusAve_scaffold_38984 | 1,913 | 2,168 | + | 39,918 | 2,040 | 2,041 | 1 | 1 | TGTGAAAGCTATTAAGGACCAAATATATTACTATATATAAGAAGAAATTACTTTCTGAACAGTAACTGAGAATACTTAGCGTTAAACTTGCTGTGGATTTTTGTCTTGGCAGTTGTCACCTTACATTATTTGTCAACGGAAGTGTGTTTGGCAATTAAAAATCTTTCCTTAGATTTAGTGGTGGACTTTAACCTCTTAAATAACTGTTAGTATATCAGATTGTGTCATTGAAAATATTTTACTTGTATGAATCAT | - |
fa1_utr3_12_000069270990_000069271245 | chr12 | 69,270,990 | 69,271,245 | utr3 | Equus caballus | Equus_caballus | GCF_000002305.2 | 9,796 | Equidae | mammals | 1 | zoonomia_cactus | CM000382.2 | 84,202,885 | 84,203,140 | + | 84,719,076 | 84,203,012 | 84,203,013 | 1 | 1 | TCCCCAGATGTTATGTCATGTGCAGCTGTGAGAGCCTGCCGGAGATTGCCCCTGCAGCTCTGCACGTTCATCTTGTCCATGGTCAGGCTTGTTCTTACAAAACCAGCTGTTTCCAATTATTCATATAATTGCcagttttattttacaatgtatTGTTATTGGAGTATTTGTGCATGGGACCATTGATATTGATCAGAACTGCTTGCTCTCAGAAATTTCAGTGTTCTATCTTGTTGAAAATGCAGTTGCCTTTTT | + |
fa1_utr3_14_000069460490_000069460745 | chr14 | 69,460,490 | 69,460,745 | utr3 | Myrmecophaga tridactyla | Myrmecophaga_tridactyla | GCA_004026745.1 | 71,006 | Myrmecophagidae | mammals | 1 | zoonomia_cactus | MyrTri_scaffold_9262 | 21,922 | 22,177 | + | 101,266 | 22,049 | 22,050 | 1 | 1 | GTCCAGAGGGGAAGGCAAATTTGGAAGTTAGATGGTTCAGTCCTTGCAGAGTTCAAGGCTCTACCCAGTAAGATTTTCTAGCCAGACTTTTAAGCGTGATGGCAAGGCACTGCTGAAAGAGGCTTTGGCCAGCAGAACTAATTTGTGACCACTGTACACATGACATAGTAGTATCCAAACCAAACCAGACACTAAAATGCGCTATTTATTTGACAAAGTGAGTTTTCAAGGAGAATCAAGGCAACCACGTAATTT | - |
fa1_utr3_15_000023366519_000023366774 | chr15 | 23,366,519 | 23,366,774 | utr3 | Orientallactaga bullata | Allactaga_bullata | GCA_004027895.1 | 1,041,416 | Dipodidae | mammals | 1 | zoonomia_cactus | AllBul_scaffold_10450 | 55,970 | 56,225 | - | 85,975 | 56,097 | 56,098 | 1 | 1 | CAATTTAAAATGTTTACAAACTGCAGTGCAATCTACTGTTAGTGAAATGTCTAAGTCAAGATAAATGCATATGTAATCACCAAGTCCTCACAGAAAAGTAAAATGTGCTTTTATACTTCTGAGGTTAGGTCAGAAGCATATTTTGTGCAATATTATGTTAATGTGCCTATATATTATGAATAAATTATTTTAGTTGTACATTGCTTAAATCAAGAATTTTTCAATGTTTGAGTAAGAACCATCAGTTTAGCTATA | + |
fa1_utr3_20_000034713100_000034713355 | chr20 | 34,713,100 | 34,713,355 | utr3 | Zalophus californianus | Zalophus_californianus | GCA_004024565.1 | 9,704 | Otariidae | mammals | 1 | zoonomia_cactus | ZalCal_flattened_line_7394 | 36,632 | 36,887 | - | 167,266 | 36,759 | 36,760 | 1 | 1 | CCTGTTATACACATACACAGGCATGCCACATGACTGGATCGAGGTGGTTGTGTCCTTGAGTCTGTCAACATGTCACAACATGATCAACCACAGTCTTCTCATTTCAGCCGGTCTCAACACAAAACACCTATGAGGGATACACTCAACTTGTTGGTTCCATATGGAACTAGGTGGCAAGGCAAAAGGGAAGATACAAGGGGCTCCGATGTGTCTGCATTCAGTCCCCTCACATAAAGCCACATGGATCTGAGAAGG | - |
fa1_utr3_2_000080648105_000080648360 | chr2 | 80,648,105 | 80,648,360 | utr3 | Lipotes vexillifer | Lipotes_vexillifer | GCF_000442215.1 | 118,797 | Lipotidae | mammals | 1 | zoonomia_cactus | KE557723.1 | 398,965 | 399,220 | - | 731,531 | 399,092 | 399,093 | 1 | 1 | TTAAATTGCTCAATTTGTGGGTCACACACTTAAGCGTATTGGCTAGTACACTTTTGCactgaaacagaagcaatacaaGCTTTATGTTCTACCATTACACTTCCAGATTTTTCGCTTATTAATATACCTGCCAACTTAATGATTCTTGCATGCATTAGAGTTTGCTTTTGTAGAGTTAAGTTTATTTTCCCCATCCCTCCCACTCCCATAAACATTGCAATGTGAACTCTTTGCCCAATTTTACTAGAATGTTGC | - |
fa1_utr3_6_000143940663_000143940918 | chr6 | 143,940,663 | 143,940,918 | utr3 | Eubalaena japonica | Eubalaena_japonica | GCA_004363455.1 | 302,098 | Balaenidae | mammals | 1 | zoonomia_cactus | EubJap_flattened_line_31366 | 5,569 | 5,824 | + | 44,284 | 5,696 | 5,697 | 1 | 1 | GCCATAGCCAACCTATAGTTTTACAGAAACAATTTCTTGTGGAATAATAGATGTCTCCATTTTAAAAAAGCATTTTAAATGTAGTTTGAATATTTTCCACAGGATGCTACAATGTGAGTTATCACTTCATTTATCTTAAAAGACTAAACTGATTGTCAGTTACATCTGACAGAAAACAAAAAAAAAAATCACTGTGTAACCAGGTTAAGTGGTAAAATAATCCAGGCGTCAGTCAAAAAAAGCATTTTACTGACT | - |
fa1_utr3_2_000200980225_000200980480 | chr2 | 200,980,225 | 200,980,480 | utr3 | Columba livia | colLiv1 | Cliv_1.0/colLiv1 | 8,932 | Columbidae | birds | 2 | ucsc_multiz100way | KB375802 | 185,391 | 185,646 | + | 722,956 | 185,518 | 185,519 | 1 | 1 | ATGCCACATGTCTTCCCCTCCAGGACACAGGGTCATTCTGCTGATAGACTAACATTGAGACACCACCACGCTGTGGAAGCAGCTTGGTTTGTAAGCGGGAGGGAAACGCCGCTTTCCCAGGAATTAACGGCTAGCCCCGCTctagttttgttgttgttcttatgAGCTGCTGATCACTGAATTGAAAGGTGTGTTTGGGTCAAGAGTATTTTTCAGGCTGCTTTCTACAGTATCTTGGCTGTTGGACACCTCTGC | - |
fa1_utr3_17_000049828759_000049829014 | chr17 | 49,828,759 | 49,829,014 | utr3 | Anoura caudifer | Anoura_caudifer | GCA_004027475.1 | 27,642 | Phyllostomidae | mammals | 1 | zoonomia_cactus | AnoCau_scaffold_2722 | 145,932 | 146,187 | + | 310,749 | 146,059 | 146,060 | 1 | 1 | ATGTATGACATGTCACCCTTCCCAACTTGGTCGCCTCCAACACTGCTGTCTTCATGTGGAGCCCTCGCCACAGTCCCAACTCTGGTCATTTGTGCCTTTCTCTAGTCATCTCTGTACACTACCCGCACTCCCTGTGGGGTGGGGGAAGCTCGTTTTAAGCATGTTCCGTGGCAGCTCCCTGCCAGTTTCAGTGTCATTTAAAACTTATCCAAAAGCAACTTCACTGGGGGTTTTCTTAAGGGGTAAAGGCCTTTT | + |
fa1_utr3_16_000023067657_000023067912 | chr16 | 23,067,657 | 23,067,912 | utr3 | Dasypus novemcinctus | Dasypus_novemcinctus | GCF_000208655.1 | 9,361 | Dasypodidae | mammals | 1 | zoonomia_cactus | JH568272.1 | 491,728 | 491,983 | + | 586,843 | 491,855 | 491,856 | 1 | 1 | taagtgtgtgtgtgaagaGAATTCAATTGCAAATTGTTAAAATGCGTCGCCTTATTCTGCCATTGAACCAAATAACAGCCATAGGCAAAGTATTGATACCAAGCTAACTGGAATAACTGTAGATGATTCCCTGGACAGTCCCTTTAATAATTGTACATATTTCTTTCTAGAGAACTCTAATGACTTTTGTCGGACACTAGGGTTTTGAAACCTGTGATCCAGTCACGCTATCATTAGTGTGGTCTGTAGGAGGAT | - |
fa1_utr3_8_000144331952_000144332207 | chr8 | 144,331,952 | 144,332,207 | utr3 | Geosciurus inauris | Xerus_inauris | GCA_004024805.1 | 3,371,099 | Sciuridae | mammals | 1 | zoonomia_cactus | XerIna_scaffold_32283 | 27,191 | 27,446 | + | 44,268 | 27,318 | 27,319 | 1 | 1 | CCGAACCCCTGTCCTTCCCGCCGAAGCCCGGGACTTGAGATGTCCAGGATCACTTATTCCGCCTCTGAGCCGGGACCCTAGCTGGGCTCTGCCTCCTGGGAGCCGAGGACCCCGCCTCCCAGAGGCCGAACCCTCATCCGAGGCCCGGGCCCATCCCCACTCAGTTGCCAACTTTCGCCGGTCTATGCCAAAGCCTCGGCGGCGACCCTGCTCAAGGGCCCGCCCCATTGGCCGCCGCCTTTGTGACGTCACTGC | - |
fa1_utr3_10_000073235261_000073235516 | chr10 | 73,235,261 | 73,235,516 | utr3 | Castor canadensis | Castor_canadensis | GCA_004027675.1 | 51,338 | Castoridae | mammals | 1 | zoonomia_cactus | CasCan_scaffold_53454 | 7,447 | 7,702 | + | 29,125 | 7,574 | 7,575 | 1 | 1 | GGAATTTTACTGACAATAAGGGGCAAGAATCAGAATTTCAACAAAATATACTTAGAATGCTATTTTTATTATTACAACTTCAACTTTTATTCTTGGAGTTAAACCACTAGATAAAATCTTAAGTGTGTTAAATTCTAGTACTTTTCCCTAGTTCTTTCCCCAACTATCAAGAATAGGAAACATGTCACTTTACCAAAAATGACTGAGTTGTGTTGGGCCTGGAGAAGAAGTCAGGTAAAAGGAGCGGGTCTTTGG | - |
fa1_utr3_3_000064003120_000064003375 | chr3 | 64,003,120 | 64,003,375 | utr3 | Tupaia tana | Tupaia_tana | GCA_004365275.1 | 70,687 | Tupaiidae | mammals | 1 | zoonomia_cactus | TupTan_flattened_line_40165 | 334 | 589 | - | 17,272 | 461 | 462 | 1 | 1 | GTGCAAAACATTTTCCATTTTCGGATCATTTAAATGAGCACTACATACTGTCAGTGTGAATGTAGGGCTTTGAAAGCATTTTGCTGTTTTTTTTTTTTTTTTTTTTTTTGAGCTTGGTTATAAAAGCAATCTCCTTTGTTAAAATGTGTGAATAGTTCAATAATTTGTACACATAATCAAGAGCATCTCAGCTGGACTTTGTGTTGGCTGCTGTATAGAACATGAACAAATGTCAAGGGATAGAAAATTACTTTG | + |
fa1_utr3_18_000021523310_000021523565 | chr18 | 21,523,310 | 21,523,565 | utr3 | Orientallactaga bullata | Allactaga_bullata | GCA_004027895.1 | 1,041,416 | Dipodidae | mammals | 1 | zoonomia_cactus | AllBul_scaffold_183887 | 1,269 | 1,524 | + | 4,071 | 1,396 | 1,397 | 1 | 1 | TAGAATGTAGAAGATATTTGTATTTAAAAAAAAAAAGTAGCTTTGTCTTTCTCTGTGCAGTGTTAGTTTAAGATTTATAATCTTATATGTATTGAAACTTTTGGCAAAATTTCCACAGGAGTTAAAAGTTTACTATTTAAACTGAACAAAACAAAATCCGTAAATGCAGAGCAGGCCTTGTGTGCATTGCTGAAGCTTCTCTTGCTGACTTCCTTTGCTTCTCCCATTCTTTCAAAAAACAGGTCCCCCCCCCCC | + |
fa1_utr3_6_000108987104_000108987359 | chr6 | 108,987,104 | 108,987,359 | utr3 | Gallus gallus | galGal4 | Gallus_gallus-4.0/galGal4 | 9,031 | Phasianidae | birds | 2 | ucsc_multiz100way | chr3 | 66,555,879 | 66,556,134 | - | 110,447,801 | 66,556,006 | 66,556,007 | 1 | 1 | TGGCAGTTGAAAAGACGGGGCTGTGCCGAAGCGCTGCCCGCTGGGGGTGGTTTGGCTTCAGCCAGCACGGGACGCTCTATGGACTTGTGGCAATATCGCAAACCATGGCTGTATAGATCTTGTAAGGCAAACGCAACAGGAGTTGGAGCGTGAAAGGAAGTGGGACTTGATGACATTTGCTTTCCCTACGagaataattttagaaaatcttGATGCTGCTATTTGTGCTGGTGGAGCAAACAGAGAGGCTGTTCC | - |
fa1_utr3_14_000088185202_000088185457 | chr14 | 88,185,202 | 88,185,457 | utr3 | Dasypus novemcinctus | Dasypus_novemcinctus | GCF_000208655.1 | 9,361 | Dasypodidae | mammals | 1 | zoonomia_cactus | JH575011.1 | 4,106,666 | 4,106,921 | + | 4,412,554 | 4,106,793 | 4,106,794 | 1 | 1 | CGTGCCTTAAACAGACTTTTCGTTAGTCCGAAATTACATAGCATTGAGGGATATATTTCACTGTGCCATAAATGACTGAAAGCTTGCTCTGCCAAAAGGAATCGAGGCACTTCGCTTCAGACAACAGCTGCAGGACACGCAGGGGGCGTTCGCACACGTGGGAGGTTTCCACCGCACATGCTAAGGCAGTGTCCGTGGCTGATGCCGTGCAGCCGTGCAGTGCCGCCCGGGCCTGGCACTCGTAAAGGGCAGCTA | - |
fa1_utr3_8_000042405439_000042405694 | chr8 | 42,405,439 | 42,405,694 | utr3 | Tadarida brasiliensis | Tadarida_brasiliensis | GCA_004025005.1 | 9,438 | Molossidae | mammals | 1 | zoonomia_cactus | TadBra_scaffold_33800 | 18,906 | 19,161 | + | 35,017 | 19,033 | 19,034 | 1 | 1 | CACCCCTGGGAGCTCACTTACAATCCCACCAGGAGCTACTGCCCAGCTTAGCCAGCCTACCTTTTGGATGGGCCCAACCTCTCTGGACTTTGGGACAGAGAGGGTCATAGCTCTTCAGAAGAACAAAAAGTTTCACTCCTGACATTTCATAAAGTAAACGTAAGGCCCAAACACACTGGCTTCATTCTCTTCCTCTCCAGAGATGTTTCTGTTGTCCTACTAGTGCTTGTGGAACCAGCTGGACTCACGCCAAGA | - |
fa1_utr3_12_000094305262_000094305517 | chr12 | 94,305,262 | 94,305,517 | utr3 | Platanista gangetica | Platanista_gangetica | GCA_054084255.1 | 118,798 | Platanistidae | mammals | 1 | zoonomia_cactus | PlaMin_flattened_line_177129 | 6,606 | 6,861 | - | 7,372 | 6,733 | 6,734 | 1 | 1 | GCTGTGACAACCACTCCAACTCTATGTACAGAAGCGCTCCCACAGTACACAAACAGGCACAGTGCTTGGTATGCTTTCTAAAAGCTGTGCATGTGCCTTGCTCTCTTACGACAGTGCTCAAAGTGGAACCTATGTGCAAACTTAAAAAATTAACGACACAGAGTAGCTTAAGCAGCCATTTTGCTCCCAAGTCGTCTGAAGAACTTTACCAGATTAAGCCAGGCCCCAGAGTGCTTACTTATATCCACTTGCATT | - |
fa1_utr3_1_000065414666_000065414921 | chr1 | 65,414,666 | 65,414,921 | utr3 | Cricetomys gambianus | Cricetomys_gambianus | GCA_004027575.1 | 10,085 | Nesomyidae | mammals | 1 | zoonomia_cactus | CriGam_scaffold_15241 | 56,507 | 56,762 | + | 78,908 | 56,634 | 56,635 | 1 | 1 | ATGTGAACCTCTCAAAAATGCTCTTTTAAAATAGAGGTAACCATAGAAACCAAGGTATTATTTATTAATGTATTAGAAAATAACACTTGACCCAGTGTGTGCTTGCCTTATTTAAAATTGTGCTCTgggcctggagagactgctcggcagcaaagagcttgtgctgctcttgtagaggctctgagttcaggtcccagcacccacgtcaaacagctctatagctgcctatagctccagctccaggggatgtgatgA | + |
fa1_utr3_18_000072537937_000072538192 | chr18 | 72,537,937 | 72,538,192 | utr3 | Craseonycteris thonglongyai | Craseonycteris_thonglongyai | GCA_004027555.1 | 208,972 | Craseonycteridae | mammals | 1 | zoonomia_cactus | CraTho_scaffold_1939 | 114,061 | 114,316 | + | 114,668 | 114,188 | 114,189 | 1 | 1 | CGGTCGTTTCATTTCTCCTGAAGACCTTGTCGCCTAACACCCATCAGAGGCCAGGTTCCCGAGGGACGGTCAGTATTCAAAGAAAACACTGGAGATGTGGGAGGGAATCGTTCTTTGACCGCCGCAGCCTGACGCAGGTTGGAGAGAAGCTGGCCGGCTCCGCCAAGTCCACGGCGATCGGAGGGCGCATTCCGGGGCCCCGATGGGGGCTTGCCCGCCGGGCCGGGCCTCTGTGTCTATAGAGGGAACACCAAG | + |
fa1_utr3_10_000068377940_000068378195 | chr10 | 68,377,940 | 68,378,195 | utr3 | Geosciurus inauris | Xerus_inauris | GCA_004024805.1 | 3,371,099 | Sciuridae | mammals | 1 | zoonomia_cactus | XerIna_scaffold_78354 | 2,061 | 2,316 | + | 9,015 | 2,188 | 2,189 | 1 | 1 | ATTAAGTTATCTCTAAGTTTAATTCAAATTAAAATATTAAGGCAGTGGGAGTGGACCCAAGCTCTTCTCTAAGGATACAGAAAGTGAAATAAAAGTGAGAGTGAGGTAGGCCTTGAAGTTGTGCTATCACAGAAGAGGGCTTGAGGGAACTGGAAAACTGAAATGCTAAAGCATAGGGTGATGGCCAACCTGGGTTATAAACTATTTTAAAAATCAGTAAGGGAGCCATTAGGCAAAGAGTGGGCCAATGGGGGA | + |
fa1_utr3_18_000046266295_000046266550 | chr18 | 46,266,295 | 46,266,550 | utr3 | Alligator mississippiensis | allMis1 | allMis0.2/allMis1 | 8,496 | Alligatoridae | reptiles | 3 | ucsc_multiz100way | JH732977 | 727,934 | 728,189 | - | 791,622 | 728,061 | 728,062 | 1 | 1 | GTGATTGTGGTTTTCAGATCAATACCCTTTAAAATTTGTTAAAAGAGTCAAAGAAATATGTAGTGTCTTAAATAAAAGAAAACCGGCATCAGGCTAAAATACGTGATTTGTTTAAACAAACACAGTGCACAATTGGAGGAAGTTTAGTTAGGACGCAGTCATTTTTATATACACATGGAAGTCACATCATATACAAACTGAAAACAGAATTAGTTTGCATTTTTTTTTAATGGAAGGACTATGAATAGGTCCCTG | - |
fa1_utr3_21_000025769849_000025770104 | chr21 | 25,769,849 | 25,770,104 | utr3 | Odocoileus virginianus | Odocoileus_virginianus | GCA_002102435.1 | 9,874 | Cervidae | mammals | 1 | zoonomia_cactus | KZ100570.1 | 564,417 | 564,672 | + | 591,854 | 564,544 | 564,545 | 1 | 1 | taattaatttttttttaaaaaggagccaTAAGAAACCAAACTaaaccaaaattttatttctgcttgaggtatactttttcagatttttaaatctctgaCAGGAAAAACAGAGATCATCTGAGAACTTTTGTAATGGTTGGTTTATTAGGATTTAATGTCTCtcttataataatttaaattcttGGCCTGACATTATGAAAAatctatacagtaaatccttaaaATTGGCTTTTGAGTAAAGCCAGATTTAAACCT | - |
marin-dna/functional-utr3
Human-anchored 255 bp vertebrate sequences from the Zoonomia 447-mammal Cactus alignment and official version-matched UCSC hg38-to-target liftOver chains.
This draft covers the utr3 region cohort with all species scope and preserves source FASTA/2bit letter case.
Non-human rows project only the central human nucleotide and extract the 255 bp target window centered on its unique mapped locus.
For the 28 non-mammalian targets, the stable ucsc_multiz100way alignment_source value identifies the pinned UCSC assembly cohort; the actual projection operation uses the matching checksum-pinned pairwise liftOver chain.
Anchor eligibility uses the pipeline's pinned phyloP conservation filter. Sequence case is independent of that filter: lowercase bases preserve source repeat masking, uppercase bases preserve source non-repeat-masked sequence, and conservation scores never rewrite emitted characters or case.
Produced by the commit-pinned vertebrate projection pipeline.
Human anchor provenance
Human anchors were constructed on GRCh38 from the complete Ensembl release 115 GTF with all qualifying transcripts; RefSeq and canonical-transcript-only filtering were not used. The enhancer input is ENCODE SCREEN Registry V4 dELS/pELS. The five disjoint classes use the base-priority order cds > utr3 > tss_region > ncrna > enhancer followed by the source-arm window-majority gate. The shared projection catalog requires at least 10% human bases above the pinned phyloP cutoff; this initial training dataset contains only the nested at-least-20% catalog. Projected 10–20% rows are excluded and retained as a separate producer artifact.
Coordinates and sequence semantics
Human source coordinates use GRCh38/hg38 primary chromosomes. All human and target coordinates are 0-based and half-open. Every emitted sequence is exactly 255 bases, preserves its source FASTA/2bit letter case, and is oriented to the human anchor.
The published format is zstd-compressed JSON Lines under data/train/ and data/validation/.
The release is validated before upload against a producer-keyed manifest of file sizes and SHA-256 checksums, and the immutable Hub revision exposes each large-file SHA-256 identifier.
license: other preserves the source-specific terms of the public genome assemblies, annotations, and alignments rather than relicensing those inputs.
Splits
train: 11,364,040 rows after removing the validation sample and applying the configured reverse-complement augmentation.validation: 16,384 original-orientation rows sampled uniformly without replacement with seed 517 before augmentation (4,194,304 tokens including BOS).
The split is row-level and does not stratify by chromosome, species, or human anchor. Different species projections from one human anchor may occur on opposite sides of the split. The reverse complement of a selected validation row is excluded from training.
The selected target manifest contains 135 family-deduplicated projection targets; human reference rows are added separately once per anchor.
| Projection backend | Clade | Selected species |
|---|---|---|
| ucsc_multiz100way | amphibians | 1 |
| ucsc_multiz100way | birds | 11 |
| ucsc_multiz100way | jawless_vertebrates | 1 |
| ucsc_multiz100way | lobe-finned_fish | 1 |
| ucsc_multiz100way | ray-finned_fish | 9 |
| ucsc_multiz100way | reptiles | 5 |
| zoonomia_cactus | mammals | 107 |
Schema
query_name:Stringsource_chrom:Stringsource_start:Int64source_end:Int64region_label:Stringspecies:Stringalignment_name:Stringassembly:Stringtaxonomy_id:Int64family:Stringclade:Stringphylogenetic_rank:Int64alignment_source:Stringt_chrom:Stringt_start:Int64t_end:Int64t_strand:Stringt_src_size:Int64pre_resize_t_start:Int64pre_resize_t_end:Int64fragment_count:Int64aligned_bases:Int64sequence:Stringaugmentation:String
Intended use and limitations
This dataset is intended for genomic language-model research and is not a clinical resource. Assembly quality, alignment gaps, repeat masking, family-deduplicated species selection, human conservation selection, and the center-nucleotide acceptance contract affect the observed sequence distribution. Projecting the center nucleotide does not establish that both 127 bp target flanks are homologous to the full human anchor.
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